Yes when at tdc #1, the "up" on the cam gear is up and the two lines/slits on the gear should be even with the head.
Did you adjust the valve lash on each cyl? If the cam was replace then this has to be done.
Check the spark plug wires to be sure they are on correctly. Order 1-3-4-2, with #1 cyl being the one closest to the drivers side of the car.
What was the compression readings on each cyl - please post the numbers.
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