So i out in a new transmission and there two tubes on near the fire wall, are these suppose to connect with the two hoses coming out of the radiator bottom? and if so what matches where?

 

your auto had a trans cooler...the 5 speed does not.
Now does the 5speed have the coolant tubes or are you talking about your auto trans??....I don't really understand your question

 

I'm talking about my 5 speed, theres two small rubber tubes near the VSS connector on the firewall side of the transmission.

And what do i do with the coolant lines that use to plug into the auto transmission?

 

huummm I'm not too sure what the two hoses on the 5speed are I would have to really think about it and do some research. I just can't picture or remember thos hoses.

Now the auto lines you don't have to do anything with. b/c they go to the trans cooler that you won't be using anymore.

 

Some years have hoses coming from the VSS. That's for speed-sensitive power steering. I think you have to have the rest of the PS system to match. I hope you can leave the hoses disconnected & ignore them, or find a VSS for a car without that PS system.