Solved!!!!
 

In case anyone finds this down the road having the same issues, I have found the problem. I ordered a new cabin fuse box but that didn't fix it, but traced it down to the main power window controller. Once we unhooked that everything started working. A new one is on order, only $30. If anyone else has any issue like this start unhooking things until the other things start working, something grounded out and fouled the circuits in the fuse box.

Thanks. We all appreciate hearing the end of the story. There's too many threads where we never find out how it eventually gets fixed.

I'm hoping this solves my issue. It would make sense as when we get a heavy rain it acts up. Thank you very much.